CytoSpec - an APPLICATION FOR HYPERSPECTRAL IMAGING


 
Please select the initial letter of your search item:
 
A B C D E
F G H I J
K L M N O
P QR S T U
V W X Y Z

A - E

 
 
A
 
about
absorbance <--> transmission spectra
add mode
additional parameters
Agilent files import
ANN imaging (Synthon)
ANN imaging (SNNS)
ANN colormap (color.txt)
AQM - acquisition mode
artificial neural networks (ANN)
AS1 - additional sample information 1
AS2 - additional sample information 2
AS3 - additional sample information 3
aspect ratio (display large maps)
ASCII, export
ASCII, import
APO - apodization function
APT - aperture size
auto scale
automated preprocessing
average factor (export)
average data (export)
average linkage (HCA imaging)

B
 
baseline correction
basic concepts (main window)
batch preprocessing
batch multiple files
binning (spatial domain)
Bruker OPUS files (import)
BSP - beamsplitter setting
C
 
capture
cbt-file (batch preprocessing)
centd method (HCA imaging)
change colors
chemical imaging
city block distances (HCA imaging)
class assignment (export)
clear
cluster analysis (HCA imaging)
color
colorbar
color range compression
colormap
color.txt file (change ann colormap)
compensation (water vapor)
complete linkage (HCA imaging)
compress (memory option)
conversion of ABS <--> TR spectra
convolution data
cosmic spike removal
criterion (quality test)
crop (spatial domain)
customize
cut (spectral domain)
cut (spatial domain)

D
 
data organization
data reduction
data blocks
data block history
DAT - date of Measurements
dead pixels
deconvolution (3D-FSD)
deconvolution data
define ROI
delete (data blocks)
delete class assignment
dendro (button: HCA imaging)
derivative
derivative data
derivative order
derivatives (frequency maps)
DET - type of detector
Digilab (now Agilent) files (import)
dispersion correction
disclaimer
display colorbar
display large maps
display multiple spectra
display spectra
distance matrix (HCA maps)
double column ASCII (import)
download demo version
draw (change colors)
D-values (HCA imaging)

E
 
edit colormap
edit parameters
Euclidean distances (HCA imaging)
Euclidean squared distances (HCA imaging)
exit
export spectra
export maps
external spectrum, subtraction by

 

F - J

 
 
F
 
factor of interpolation
feature selection (export)
FIL - type of optical filter
file (pull down menu)
file info (pull down menu)
flip
fnm file (batch multiple files)
FSD (3D-FSD imaging
frequency imaging
FPA detector
fuzzy C-means (FCM) imaging

G
 
ga_ors (export)
gamma factor (3D-FSD imaging
Galactic Grams/32 files (import)
grid on/off
group average (HCA imaging)
H
 
hardware requirements
HCA imaging
help
hierarchical clustering (HCA maps)
history.log
hot keys

I, J
 
icons
image (button: HCA imaging)
imaging, ANN
imaging, chemical
imaging, FCM
imaging, frequency
imaging with distance values
imaging, HCA
imaging, KMC
imaging, n-findr
imaging, PCA
imaging, Synthon
imaging, VCA
imaging, 3D-FSD
import ASCII
import binary
increment filename (import ASCII)
increment extension (import ASCII)
INS - instrument type
instrument parameters
intermediate (memory option)
internal data organization
internal spectrum, subtraction by
interpolate (spectral domain)
interpolate (spatial domains)
interpolation (set color)
interpolation factor (frequency maps)
installation
invert colormaps

K - O

 
 

K
 
k-factors (3D-FSD imaging
k-means cluster (KMC) imaging

L
 
LAS - laser wavenumber
large maps
LDA (export)
load
load ASCII
license
LWN - lower wavenumber limit
license.txt
lines to skip (load ASCII)
log file

M
 
macro
main window (basic concepts)
MAN - instrument manufacturer
Matlab data format (save)
map statistics
maxima (frequency maps)
measurement parameters
median algorithm (HCA imaging)
min-max normalization
memory options
methods A-H (chemical imaging)
minima (frequency maps)
move mode
multivariate imaging

N
 
n-findr imaging
NeuroDeveloper interface
Neural networks (Synthon)
Nicolet (now Thermo) files (import)
noise (quality test)
noise reduction (PCA)
NOD - number of data points
NOS - number of scans
normalization
normalized Euclidean distances (HCA imaging)
normalize scores (PCA imaging)
number of spectral regions (multivariate imaging)
number of clusters (HCA imaging)

O
 
obtain peak positions from derivatives
offset correction
OPN - operator Name
ordering the program
original data

P - U

 
 
P
 
PCA imaging
PCA based noise reduction
peak pick (frequency maps)
Perkin-Elmer files (import)
PHC - phase correction mode
PHR - phase resolution
PIP - phase interferogram points
preface
preprocessing
preprocessed data
plot (file menu)

Q
 
quality test

R
 
ratio (chemical imaging)
readme
region of interest (ROI)
RES - nominal resolution
rotate

S
 
sample thickness
save
save Matlab
SAM - sample name
SAF - sample form
Savitzky-Golay (smooth)
Savitzky-Golay (derivative)
scale manually (set color)
set color
select colormap
set standard (colormap)
set path
set display limits
settings
shortcuts
show class assignment
search maxima/minima
(frequency maps)

show class assignment
show manipulations
show parameters
show mode
signal-noise-ratio (S/N)
single column ASCII (import)
single linkage (HCA imaging)
smooth
smoothing points (derivative)
smoothing points (interpolate)
SNG - signal gain
SNNS (export)
SNNS result file (ANN imaging)
software requirements
source block
spatial preprocessing
spectral preprocessing
spectra (HCA imaging)
spectral regions (multivariate statistics)
spectral region for peak search (frequency maps)
speed (memory options)
SRC - source setting
statistics of a map
STX - step in x dimension
STY - step in y dimension
subtraction, spectral
swap data blocks
Synthon imaging (ANN)
system requirements
SZX - area size in x dimension
SZY - area size in x dimension

T
 
target data block
Thermo-Nicolet *.map files (import)
thickness (quality test)
threshold, activations (ANN imaging)
threshold, mult. activations (ANN imaging)
TIM - time of Measurement
test for additional bands
test for sample thickness
test for S/N
test for water vapor
tools (pull down menu)
TOOLDIAG
TOS - type of spectra
transmission <--> absorbance spectra
true aspect ratio (display large maps)

U
 
univariate imaging
use log file (export)
use spectral windows (export)
UWN - upper wavenumber limit

V - Z

 
 
V
 
Varian (now Agilent) import
VCA imaging
vector normalization
VEL - scanner velocity

W
 
Ward's algorithm (HCA imaging)
water vapor compensation
wavenumber table (export)
WiTEC files (import)
WVS - wavenumber step
X
 
XDI - number of pixel in x-direction
xyz-1 ASCII (import)
xyz-2 ASCII (import)

Y
 
YDI - number of pixel in y-direction
Z
 
ZFF - zero filling factor
zoom mode

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